HotStart™ Universal Blue 2X Probe qPCR Master Mix (with UDG)

Quantitative PCR (qPCR, also known as Real-time PCR) is a very versatile technique for accurately analyzing gene expression. According to different principles, it can be divided into two categories: dye-based method and probe-based method. Commonly used probes include Taqman probes, molecular beacons, dual hybridization probes, MGB probes, etc. Among them, the TaqMan probe is the most classic and widely used. Taqman probes can be hybridized specifically to the target sequence, with a 5' end labeled fluorescent reporter and a 3' end labeled quencher. When the probe is intact, the fluorescent reporter on the probe is quenched by the quencher due to fluorescence resonance energy transfer (FRET). When the primer-mediated extension reaches the probe position, Taq enzyme with 5' à 3' exonuclease activity hydrolyzes the probe bound to the target sequence, lead to the separation of the fluorescent reporter at the 5' end and the quencher at the 3' end, apart more than 10 nm, beyond the distance of FRET, then the fluorescent reporter emits fluorescence with appropriate excitation light. With each PCR cycle, more fluorophores are released, and the fluorescence intensity is proportional to the number of newly synthesized fragments, enabling quantitative detection. Commonly used fluorescent reporters include FAM, HEX, TET, JOE, NED, Cy3, Cy5, Cal Fluor Gold 540, Cal Fluor Orange 560, etc., quenchers BHQ1, BHQ2, BHQ3, TAMRA, Dabcyl, NFQ-MGB, etc. When designing probes, pay attention to different models of the qPCR machine (different qPCR machines have different fluorescent channels), various abundance of target genes, and the types of experiments.

The HotStart™ Universal Blue 2X Probe qPCR Master Mix (with UDG) is a high-quality master mix used in probe-based real-time PCR. It’s a 2X PreMix using a mutant hot-start Taq DNA polymerase with improved template affinity, resistance to PCR inhibitory components such as blood, serum IgG, humic acid, etc. This product is particularly suitable for quantitative or qualitative detection of low-abundance or high-specificity genes of interest.

This product contains a visible blue dye to minimize aliquoting errors without affecting qPCR reactions or fluorescence signals. Additionally, thermolabile UDG and dUTP were included in the master mix to prevent carryover contamination between reactions. UDG pre-treatment of the reaction can ensure the accuracy of qPCR amplification results and reduce false positive results caused by aerosol contamination from previous reactions.

This product is a 2X master mix that requires only additional primers, probes, and templates, which is convenient to use and compatible with fast procedures, that means shortened time to generate the result, and enables accurate, highly repeatable quantification of target gene over a wide dynamic range. This product can be used for multiplex qPCR and supports up to quadruplex qPCR. This product contains a special ROX dye that is suitable for all qPCR instruments, meaning that there is no need to adjust the concentration of ROX according to different instruments.